Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNSLVLVYTTFSNVKEAKAVSEELLNKKLIICVNIFPKVNSLYLWKGEINSSCEVIAIMKSRSDQVDKIVEKVEAMHSYDQPAIVIIPIEKVNKSFANWVNSVIDVSSIGV
1NAQ Chain:A ((9-112))
-TASVVVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR------
General information:
TITO was launched using:
RESULT:
Template:
1NAQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62318 for 686 contacts (-90.8/contact) +
2D Compatibility (PS) -11712 + (NN) -6522 + (LL) 568
1D Compatibility (HY) -8400 + (ID) 1250
Total energy: -89634.0 ( -130.66 by residue)
QMean score : 0.571
(partial model without unconserved sides chains):
PDB file :
Tito_1NAQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NAQ-query.scw
PDB file :
Tito_Scwrl_1NAQ.pdb
: