Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKYDDFIVGETFKTKSLHITEEEIIQFATT-FDPQYMHIDKEKAEQSRFKGIIASGMHTLSISFKLWVEEGKYGEEVVAGTQMNNVKFIKPVYPGNTLYVIAEITNKKSIKKENGLVTVSLSTYNENEEIVFKGEVTALINNS
3KH8 Chain:A ((178-293))
----------------EFKTSPHQAQVYRLSGDYNSLHIDPEIAKSVGFKQPILHGLCSMGVASRALFKQ-FCGGDV-ARFKSIRVRFSSPCFPGETIQTRMWQEGS-------GKVLFQA-VVKERGAVIVDGGEFVYTQD-
General information:
TITO was launched using:
RESULT:
Template:
3KH8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51095 for 834 contacts (-61.3/contact) +
2D Compatibility (PS) -12653 + (NN) -3512 + (LL) 1364
1D Compatibility (HY) -2000 + (ID) 1250
Total energy: -69146.0 ( -82.91 by residue)
QMean score : 0.383
(partial model without unconserved sides chains):
PDB file :
Tito_3KH8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KH8-query.scw
PDB file :
Tito_Scwrl_3KH8.pdb
: