Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDNKTYEISSAEWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKK---DNKIFQYYSLVEESDIKYKTSKNFINKVYKGGFNSLVLNFVEKEDLSQDEIEELRNILNKK
1JGS Chain:A ((28-135))
---SPLDITAAQFKVLCSIRCAACITPVELKKVL----SVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLT--------TGGAAICEQCHQLVGQDLHQELT--KNLTADEVATLEYLLKK-
General information:
TITO was launched using:
RESULT:
Template:
1JGS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48646 for 634 contacts (-76.7/contact) +
2D Compatibility (PS) -10835 + (NN) -2493 + (LL) 1452
1D Compatibility (HY) -7600 + (ID) 850
Total energy: -68972.0 ( -108.79 by residue)
QMean score : 0.562
(partial model without unconserved sides chains):
PDB file :
Tito_1JGS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JGS-query.scw
PDB file :
Tito_Scwrl_1JGS.pdb
: