Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNDNEKRVLREIYNHHNISRTQISKNLEINKATISSILNKLKYKSLVNEVGEGDSTKSGGRKPILLKVNHLYGYFISLDLTYSSVEVMYNYFDGNVIKHESYDLPDEKVSSILSIIKK-HIDIQEKLDTYNGLLGVSVSIHGVVDNEQH-VTYLPFHETEGISIAKKIKEITNVPVVVENEANLSALYERNFNHNLSYNNLIALSIHKGIGAGLIINNQLYRGANGEAGEIGKTLVSKVSDNV-E-IFHKIEDIFSQEALLHNLSNQLNE-----------------KMTLSKLIQFYNEKNPVVVEEMEQFINKIAVLIHNLNTQFNPNAIYINCPLFNEMPEILEAIKNQFKQYSR-----NEIQIKLTSNVKFATLLGGTLAIIQKVLQINDIYLDIKA
3VGL Chain:A ((2-313))------------------------------------------------------------------------GLTIGVDIGGTKIAAGVVDEEGRILSTFKVATPP-TAEGIVDAICAAVAGAS----EGHDVEAVGIGAAGYVDDKRATVLFAPNIDWRHEPLKDKVEQRVGLPVVVENDANAAAWGEYRFGAGQGHDDVICITLGTGLGGGIIIGNKLRRGRFGVAAEFGHIRVVPDGLLCGCGSQGCWEQYASGRALVRYAKQRANATPENAAVLLGLGDGSVDGIEGKHISEAARQGDPVAVDSFRELARWAGAGLADLASLFDPSAFIVGGGVSDEGELVLDPIRKSFRRWLIGGEWRPHAQVLAAQLGGKAGLVGAADLARQG-------------


General information:
TITO was launched using:
RESULT:

Template: 3VGL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -184010 for 2721 contacts (-67.6/contact) +
2D Compatibility (PS) -30894 + (NN) -13013 + (LL) 5956
1D Compatibility (HY) -6000 + (ID) 3050
Total energy: -231011.0 ( -84.90 by residue)
QMean score : 0.451

(partial model without unconserved sides chains):
PDB file : Tito_3VGL.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3VGL-query.scw
PDB file : Tito_Scwrl_3VGL.pdb: