Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------------------------MYFNQSDKFEQLKKKIL--GISFNLPEGEEFTFH---DLNSRANVQCSKAVQQ----NVGRWFAYFVKHAPRVPFIIIGKDTHGHLVYLKTGPNPHYNSNPSKG----------GVR
4AOO Chain:A ((2-144))
TMQIKIKYLDETQTRISKIEQGDWIDLRAAEDVTIKKDEFKLVPLGVAMELPEGYEAHVVPRSSTYKNFGVIQTNSMGVIDESYKGDNDFWFFPAYALRDTEIKKGDRICQFRIMKKMPAVELVEVEHLGNEDRGGLGSTGTK
General information:
TITO was launched using:
RESULT:
Template:
4AOO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21181 for 542 contacts (-39.1/contact) +
2D Compatibility (PS) -10590 + (NN) 1423 + (LL) 0
1D Compatibility (HY) -1200 + (ID) 800
Total energy: -32348.0 ( -59.68 by residue)
QMean score : 0.244
(partial model without unconserved sides chains):
PDB file :
Tito_4AOO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4AOO-query.scw
PDB file :
Tito_Scwrl_4AOO.pdb
: