Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNYDKKMINRINRIQGQLNGIIKMMEEGKDCKDVITQISASKSSLQRLMGIIISENL----IECVKVAADDEESSQELINEAVNLLVKSK--------
2GIB Chain:A ((3-99))
-NVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDAYKTFPP
General information:
TITO was launched using:
RESULT:
Template:
2GIB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 13635 for 457 contacts (29.8/contact) +
2D Compatibility (PS) -8812 + (NN) -1629 + (LL) 208
1D Compatibility (HY) 1200 + (ID) 650
Total energy: 3952.0 ( 8.65 by residue)
QMean score : 0.200
(partial model without unconserved sides chains):
PDB file :
Tito_2GIB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GIB-query.scw
PDB file :
Tito_Scwrl_2GIB.pdb
: