Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTLETLIKEQLDPHLVEVDEGTYYPRTFIQQLFVDGYFGEA----------ALRKNAEVIEAVSQSCLTTGFCLWCQL-AFSTYLENATQPHLNNDLQQQLLSGEILGATGLSNPMKSFNDLEKLNLEHTYVDGQLVVSGRMPAVSNIQEDHYFGAISKHESS---DEFVMFILRANQDGITLVEKTNFLGVNGSATYQITLNQVVVPQSQIITHDAKQFAA--TIRPQFIAYQIPIGLGSIKSSLELIDAFSNAQNGI------NQYLEYDVEAFKKRYRQLREEYYAILD-DGNLTSHLSELISLKKDIGYLLLDVNQASVVNGGSRAYTPYSPQVRKLKEGFFFAALTPTLRHLGKLEAELKG |
| 2JIF Chain:A ((39-399)) | -SVKKFAQEQIAPLVSTMDENSKMEKSVIQGLFQQGLMGIEVDPEYGGTGASFLSTVLVIEELAKVDASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLTT-EKVGSFCLSEAG-AGSDSFALKTRADKEGDYYVLNGSKMWISSAEHAGLFLVMANVDPTIGYKGITSFLVDRDTPGLHIGKPENKLGLRASSTCPLTFENVKVPEANILGQIGHGYKYAIGSLNEGRIGIAAQMLGLAQGCFDYTIPYIKERIQFGKRLFDFQGLQHQVAHVATQLEAARLLTYNAARLLEAGKPFIKEASMAKYYASEIAGQTTSKCIEWMGGVGYTKDYPVEKYFRDAKIGTIYEGASNIQLNTIAKH-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2JIF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -190270 for 2975 contacts (-64.0/contact) +
2D Compatibility (PS) -36520 + (NN) -14919 + (LL) -8
1D Compatibility (HY) -4800 + (ID) 2700
Total energy: -249217.0 ( -83.77 by residue)
QMean score : 0.380
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