Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKSAVLNEHISKAIATIGHFDLLTINDAGMPIPNDHRRIDLAVTKNLPRFIDVLATVLEEMEIQKIYLAEEIKEHNPTQLQQIKQLISSEIEIIFIPHEEMKSNLAHPLNKGNIRTGETTPYSNIALESNVTF
1OGD Chain:C ((1-131))
MKKHGILNSHLAKILADLGHTDKIVIADAGLPVPDGVLKIDLSLKPGLPAFQDTAAVLAEEMAVEKVIAAAEIKASNQENAKFLENLF-SEQEIEYLSHEEFK--LLTKDAKAVIRTGEFTPYANCILQAGVLF
General information:
TITO was launched using:
RESULT:
Template:
1OGD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58905 for 990 contacts (-59.5/contact) +
2D Compatibility (PS) -13910 + (NN) -4701 + (LL) -136
1D Compatibility (HY) -9600 + (ID) 2850
Total energy: -90102.0 ( -91.01 by residue)
QMean score : 0.592
(partial model without unconserved sides chains):
PDB file :
Tito_1OGD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OGD-query.scw
PDB file :
Tito_Scwrl_1OGD.pdb
: