Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKNLVLLGGGYGNMRIMSRILTTSLPQDYTVTLVDRMPFHGL-KPEFYALAAGTKSD-KD-VRM---KFPNHPQVNT-VYGEINDIDLDAQIVSVG------NSKIDYDELIIGLGCEDKYHNVPGAE-EYTHSIQTLSKARDTFHSISELPEGAKVGIVGAGLSGIELASELRESRSDLEIYLYDRGPRILRNFPEKLSKYVAKWFAKNNVTVVPNSNINKVEPGK----IYNCDEPKDIDLVVWTAGIQPVE-VVRNLPIDINSNGRVIVNQYHQVPTYRNVYVVGDCADLPH--------APSAQLAEVQGDQIADVLKKQWLNEPLPDKMPELKVQGIVGSLGDKQGFAYIMDRTVTGRLASILKSGVLWLYKYHNG |
| 3CGB Chain:A ((37-354)) | -MNYVIIGGDAAGMSAAMQIVRN--DENANVVTLEKGEIYSYAQCGLPYVISGAIASTEKLIARNVKTFRDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVMPEWEGRDLQGVHLLKTIPDAERILKTLET-NKVEDVTIIGGGAIGLEMAETFVEL--GKKVRMIERNDHIGTIYDGDMAEYIYKEADKHHIEILTNENVKAFKGNERVEAVETDKGTYKADLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYMQ-TNVQDVYAAGDCATHYHVIKEIHDHIPIGTTANKQGRLAGLNMLDKR-------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3CGB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -155967 for 2398 contacts (-65.0/contact) +
2D Compatibility (PS) -32185 + (NN) -15031 + (LL) 3872
1D Compatibility (HY) -14000 + (ID) 3050
Total energy: -216361.0 ( -90.23 by residue)
QMean score : 0.491
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