Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAQDRKKVLVLGAGYAGLQTVTKLQKAISTEEAEITLINKNEYHYEA-TWLHEASAGTLNYEDVL-YPVESVLKKDKVNFV-QAEVTKIDRDAKKVETNQGIYDFDILVVALGFVSETFGIEGMK-DHAFQIENVITARELSRHIEDKFANYAASKEKDDNDLSILVGGAGFTGVEFLGELTDRIPELCSKYGVDQNKVKITCVEAAPKMLPM-FSEELVNHAVSYLEDRGVEFKIATPIVACNEKG----FVVEVDGEKQQLNAGTSVWAAGVRGSKLMEE-SFEGVKRGRIVTKQDLTINGYDNIFVIGDCSAFIPAGEERPLPTTAQIAMQQGESVAKNIKRILNGESTEEFEYVDRGTVCSLGSHDGVGMVFGKPIAGKKAAFMKKVIDTRAVFKIGGIGLAFKKGKF |
| 2V3A Chain:A ((4-306)) | ----RAPLVIIGTGLAGYNLAREWRKLD--GETPLLMITADDGRSYSKPMLSTGFSKNKDADGLAMAEPGAMAEQLNARILTHTRVTGIDPGHQRIWIGEEEVRYRDLVLAWGAEPIRVPVEGDAQDALYPINDLEDYARFRQAA--------------AGKRRVLLLGAGLIGCEFANDLSSG-------------GYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKAGEGLEAHLSD--G-EVIPCDLVVSAVGLRPRTELAFAAGLAVN-RGIVVDRSLRT-SHANIYALGDCAEVDGL-----NLLYVMPLMACARALAQTLAGN------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2V3A.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -186163 for 2420 contacts (-76.9/contact) +
2D Compatibility (PS) -30589 + (NN) -2969 + (LL) 5100
1D Compatibility (HY) -11600 + (ID) 2600
Total energy: -228821.0 ( -94.55 by residue)
QMean score : 0.443
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