Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDLP-IIALDFESKEKVNQFLDLFDESL-FVKVGMELFYQEGPQLINEIKERGHDVFLDLKLHDIPNTVGKAMEGLAKLNVDLVNVHAAGGVKMMSEAIKGLRK----HNQHTKIIAVTQLTSTTEDMLRHEQNIQTSIEEAVLNYAKLANAAGLDGVVCSPLESRMLTEKLGTSFLKVTPGIRPKGASQDDQHRITTPEEARQLGSTHIVVGRPITQSDNPVESYHKIKESWLV-
1DBT Chain:A ((1-237))
MKNNLPIIALDFASAEETLAFLAPFQQEPLFVKVGMELFYQEGPSIVKQLKERNCELFLDLKLHDIPTTVNKAMKRLASLGVDLVNVHAAGGKKMMQAALEGLEEGTPAGKKRPSLIAVTQLTSTSEQIMKDELLIEKSLIDTVVHYSKQAEESGLDGVVCSVHEAKAIYQAVSPSFLTVTPGIRMSEDAANDQVRVATPAIAREKGSSAIVVGRSITKAEDPVKAYKAVRLEWEGI
General information:
TITO was launched using:
RESULT:
Template:
1DBT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104462 for 1925 contacts (-54.3/contact) +
2D Compatibility (PS) -25031 + (NN) -10709 + (LL) 0
1D Compatibility (HY) -22000 + (ID) 6000
Total energy: -168202.0 ( -87.38 by residue)
QMean score : 0.612
(partial model without unconserved sides chains):
PDB file :
Tito_1DBT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DBT-query.scw
PDB file :
Tito_Scwrl_1DBT.pdb
: