Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MENFDKVKDIIVDRLGVDADKVTEDASFKDDLGADSLDIAELVMELEDEFGTEIPDEEAEKINTVGDAVKFINSLEK
4IHF Chain:L ((8-76))
----ERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITTVQAAIDYIN----
General information:
TITO was launched using:
RESULT:
Template:
4IHF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42211 for 446 contacts (-94.6/contact) +
2D Compatibility (PS) -7563 + (NN) -2644 + (LL) 680
1D Compatibility (HY) -7200 + (ID) 2200
Total energy: -61138.0 ( -137.08 by residue)
QMean score : 0.865
(partial model without unconserved sides chains):
PDB file :
Tito_4IHF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4IHF-query.scw
PDB file :
Tito_Scwrl_4IHF.pdb
: