Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKLFIPYIMG-NKD---LIENATLLSENGADIIEIGVPFSDPVADGPVIMEAGQQAIKQGITIDYIFNQLEKHGDQ-IKCNYVLMTYYNIICHYGEQAFFEKCRDTGVYGLIIPDLPYELSQRLKQQFSHYGVKIISLVAMTTDDKRIKDIVSHAEGFIYTVTMNATTGQNGAFHPE-LKRKIESIKAIANVPVVAGFGIRTPQHVADIKEVADGIVIGSEIVKRFKSNTREEIIRYLQSIQQTLNN
2EKC Chain:A ((15-261))
REKALVSYLMVGYPDYETSLKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLLMTYYNPIFRIGLEKFCRLSREKGIDGFIVPDLPPEEAEELKAVMKKYVLSFVPLGAPTSTRKRIKLICEAADEMTYFVSVTG---------YERIKKKVEEYRELCDKPVVVGFGVSKKEHAREIGSFADGVVVGSALVKLAGQKKIEDLGNLVKELKEGLR-
General information:
TITO was launched using:
RESULT:
Template:
2EKC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -209073 for 1964 contacts (-106.5/contact) +
2D Compatibility (PS) -26184 + (NN) -14371 + (LL) 40
1D Compatibility (HY) -19600 + (ID) 4100
Total energy: -273288.0 ( -139.15 by residue)
QMean score : 0.715
(partial model without unconserved sides chains):
PDB file :
Tito_2EKC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2EKC-query.scw
PDB file :
Tito_Scwrl_2EKC.pdb
: