Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDDLNKKYLIDLHQHQNSSIEVLREFAEGNEVPIVDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISD-DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFEN---------------VNDKVYDMIFIDAAKAQSKKFFEIYTPLLKHQGLVITDNVLYHGFVSDIGIVRSRNVRQMVKKVQDYNEWLIKQPGYTTNFLNIDDGLAISIKGE
2HNK Chain:A ((9-231))
-TESLEEYIFRNSVREPDSFLKLRKETGTL-NMQISPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIADNVLWDGSVADLSHQ-----EPSTVGIRKFNELVYNDSLVDVSLVPIADGVSLVRKR-
General information:
TITO was launched using:
RESULT:
Template:
2HNK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123000 for 1650 contacts (-74.5/contact) +
2D Compatibility (PS) -22316 + (NN) -7109 + (LL) 700
1D Compatibility (HY) -13600 + (ID) 2550
Total energy: -167875.0 ( -101.74 by residue)
QMean score : 0.540
(partial model without unconserved sides chains):
PDB file :
Tito_2HNK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HNK-query.scw
PDB file :
Tito_Scwrl_2HNK.pdb
: