Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKLYTSYGTYGFLHQIKINNPTHQLFQFSASDTSVIFEETDGETVLKSPSIYEVIKEIGEFSEHHFYCAIFIPST-EDHAYQLEKKLISVDD-NFRNFGGFKSYRLLRPAKGTTYKIYFGFADRHAYEDFK----QSDAFNDHFSKDALSHYFGSSGQHSSYFERYLYPIKE
1LQ9 Chain:A ((7-90))
---------------------------------------------------------------RVGFVAVVTFPVDGPATQHKLVELATGGVQEWIREVPGFLSATYHASTDGTAVVNYAQWESEQAYRVNFGADPRSAELREALSS--------------------------
General information:
TITO was launched using:
RESULT:
Template:
1LQ9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25080 for 480 contacts (-52.2/contact) +
2D Compatibility (PS) -8757 + (NN) -5675 + (LL) 5324
1D Compatibility (HY) -1600 + (ID) 700
Total energy: -36488.0 ( -76.02 by residue)
QMean score : 0.608
(partial model without unconserved sides chains):
PDB file :
Tito_1LQ9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LQ9-query.scw
PDB file :
Tito_Scwrl_1LQ9.pdb
: