Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVDVAFVCLGNICRSPMAEAIMRQRLKDRNIHDI--KVHSRGTGSWNLGEPPHEGTQKILNKHNIPFDGMISEL-FEATDDFDYIVAMDQSNVDNIKSINPNLKGQLFKLLEFSNMEESD------VPDPYYTNNFEGVYDMVLSSCDNLIDYIVKDANLKEG
1D2A Chain:B ((7-135))
-ISVAFIALGNFCRSPMAEAIFKHEVEKANLENRFNKIDSFGTSNYHVGESPDHRTVSICKQHGVKINHKGKQIKTKHFDEYDYIIGMDESNINNLKKIQP--EGSKAKVCLFGDWNTNDGTVQTIIEDPWY-------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1D2A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48747 for 909 contacts (-53.6/contact) +
2D Compatibility (PS) -12814 + (NN) -5485 + (LL) 1904
1D Compatibility (HY) -11200 + (ID) 2250
Total energy: -78592.0 ( -86.46 by residue)
QMean score : 0.546
(partial model without unconserved sides chains):
PDB file :
Tito_1D2A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1D2A-query.scw
PDB file :
Tito_Scwrl_1D2A.pdb
: