Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | METGKSDVLDKIEKINKKDSALQEIIPKG-------YEIEHHQCGVALYQLIPSKKEGEPDKKVFI---TNTIPQITERFEDIESNEVSF-NMLFYDNKTPVNIAVSAEEISDSRQLLKLVNKK----------------------LDVTSSTSTKLVDYINVSKRYNPP----LNVKVATRLGHV--------KGYFIYPYQEVMK-----DSNVKLFSNDKGFQKLIDSFRSKGTLQGY---SKKVFAQIKDLPMVMVMLYASLGSVLLREFGLQPF-IVEISGSTSTGKTFTLNLVSSVWGTSDLITTWSSTQNSIESMASFLNSFPMFKDDTRNTHPKFVTSTT---------YNFSSGESKSRSNINLTLNAKKEWRNILISTGESSIANMADEKAGVS---------------ARVVTLQDPPYPDNFDFTTLDKSFRENYGTLGLAFIKQYESKKDVYKN-----AFESYQRYFNQKGSNEIMQRLGRAFALLQVTGEVLNDIDGFEHDHFKIIEQAYDSMVK-------------NNKTIDKPKQLLEELLQYLDANRNNIVGDGYDSVNYGDVKAVYKHDFLCIKNETVKNKLGHEMQTITGQWDKKGYLIKDKKRIQK-QVKHK-SQRHLGYAIKKEIIEELGFDFSISHNPYTESY-------- |
| 4MHC Chain:A ((21-825)) | -SEPLQLASEFVQDLSFRDRNTPILDNPDYYSKGLDYNFSDEVGGLGAFTPFQRQQVTNIPDEVLSQVSNTEIKSDMGIFLELNYCWITSDNKLILWNINNSSEYHCIDEIEHTILKVKLVKPSPNTFVSSVENLLIVATLFDIYILTISFNDRTHELNIFNTGLKVNVTGFNVSNIISYERTGQIFFTGATDGVNVWELQYNKICLTKSNLEETISQLEVDQS-RGVLHTLSTKSIVRSYLITSNGLVGPVLIDAAHIRRGMNALGVKNSPLLSNRAFKIAKIVSISMCENNDLFLAVITTTGVRLYFKGSISRRSIGSLKLDSVKFPPTSGPLSTQKASSTYINTTCASTIISPGIYFTCVRKRAEHKLYVSAPDYGILKNYGKYVENTALLDTTDEIKEIVPLTRSFNYTSTPQGYANVFASQYSAEPLKVAVLTSNALEIYCYRTPDEVFESLIENPLPFIHSYGLSEACSTALYLACKFNKSEHIKSSALAFFSAGIPGVVEIKPKSVLSPRFYGSALLITRLFSQIWEERVFVGISITRPQVEYYLSSISVLADFFNIHRPSFVSTASDAESIA-MNALILLINSIKDALSLINVFYEDIDAFKSLLNTLMYDSKTREYFFDLKFHDLFTPNAKTKQLIKEILIEVVNA-NIASGTSADYIVNVLKERF |
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General information:
TITO was launched using:
| RESULT:
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Template: 4MHC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 32869 for 4162 contacts (7.9/contact) +
2D Compatibility (PS) -58874 + (NN) -8433 + (LL) 396
1D Compatibility (HY) -13200 + (ID) 3500
Total energy: -50742.0 ( -12.19 by residue)
QMean score : 0.265
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