Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMEVCPYLEETFKILGRSWNGLIINYLSRCNDCSAHFSDMKRDLKT--------ITPRALSLKLSELAQWELVEKQIIS--TSPVQIIYVLTEKGKALAEALHP-IEAWAQSYVDLTDQRTAK
1XMA Chain:A ((35-137))
-----------SDVIRGYVDTIILSLLI-E--GDSYGYEISKNI-RIKTDELYVIKETTLYSAFARLEKNGYIKSYYGEET--KRRTYYRITPEGIKYYKQKCEEWELTKKVINKFVK-----
General information:
TITO was launched using:
RESULT:
Template:
1XMA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49304 for 558 contacts (-88.4/contact) +
2D Compatibility (PS) -10100 + (NN) -4599 + (LL) 1668
1D Compatibility (HY) -4400 + (ID) 450
Total energy: -67185.0 ( -120.40 by residue)
QMean score : 0.519
(partial model without unconserved sides chains):
PDB file :
Tito_1XMA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XMA-query.scw
PDB file :
Tito_Scwrl_1XMA.pdb
: