Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKLLLPLIIMLLVLAACGNQGEKNNKAETKSYKMDDGKTVDIPKDPKRIAVVAPTYAGGLKKLGANIVAVNQQVDQSK-VLK----DKFKGVTKIGDGDVEKVAKEKPDLIIVYST-DKDIKKYQKVAPTVVVDYN----K-HKYLEQQEMLGKIVGKEDKVKAWKKDWEETTAKDGKEIKKAIGQDATVSLFDEFDKKLYTYGDNWGRGGEVLYQAFGLKMQPEQQKLTAKAGWAEVKQEEIEKYAGDYIVSTSEGK-------PTPGYESTNMWKNLKATKEGHIVKVDAGTYWY--NDPYTLDFMRKDLKEKLIKAAK |
| 3TEF Chain:A ((51-329)) | ----------------------------ETVTIEHRLGK-TTLEQKPQRVVVIGVGALDAIDSFGIEPVAVSKFDG-TPDYLAKYKSDKYPSAGSLFEPDFETIYTQKPDLIVIGPRASKSYDELSKIAPTIVFAAEADQGYWESTQQQWRNLGKVFAIEPAVEAKIEQVDAQFKSIMQYNQQH---KSDAMLVMSSGGNLTTFGANSR--FSSVYKDFGFSETVPVSK--ESSHGDLISFEYIREHNPKTLLVVDRDKVVTKGETNIRQTFENDLVKATTAYKNGHIAYLDVNAWYIAISGVKATEQMVADMKAS------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3TEF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -44558 for 2165 contacts (-20.6/contact) +
2D Compatibility (PS) -28225 + (NN) -14793 + (LL) 3768
1D Compatibility (HY) -9200 + (ID) 2800
Total energy: -95808.0 ( -44.25 by residue)
QMean score : 0.459
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