Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAINIIEYNRSYKEELIEFILSIQKNEFNIKIDRDDQ-------PDLENIEHNYLNSGGQFWLAINNHQNIVGTIGLIRLD-------NNMSALKKMFVDKGYRNLKIGKKLLDKVIMTCKEQNIDGIYLGTIDKFISAQYFYSNNGFREIKRGDLPSSFPKLDVDNRFYYRNLKD
1TIQ Chain:A ((2-171))
-SVKMKKCSREDLQTLQQLSIETFNDTFKEQNSPENMKAYLESAFNTEQLEKELSNMSSQFFFIYFD-HEIAGYVKVNIDDAQSEEMGAESLEIERIYIKNSFQKHGLGKHLLNKAIEIALERNKKNIWLGVWEKNENAIAFYKKMGFVQTGAHSF--YMGDEEQTDLIMAKTL--
General information:
TITO was launched using:
RESULT:
Template:
1TIQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70832 for 1103 contacts (-64.2/contact) +
2D Compatibility (PS) -16542 + (NN) -6097 + (LL) 72
1D Compatibility (HY) -4800 + (ID) 1450
Total energy: -99649.0 ( -90.34 by residue)
QMean score : 0.458
(partial model without unconserved sides chains):
PDB file :
Tito_1TIQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TIQ-query.scw
PDB file :
Tito_Scwrl_1TIQ.pdb
: