Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRYFLVVFLFLFVGCMKKDFTLKDLSLPQEASSYLASSQNSSHNNQSIDPQALRENLKESYLKAWYSPWLDAKVKSNKKEVFWILKEMNKSTGYGEDLKPNAKAFNDELIKNMDIERYPSTKIKAVVVRNNDVRAVPTNKPYYLSPKGYPFDR-FQNSLVFPGTP-VLITPFNPDKTYPPLQSSFVYGWIKVSELAYMRDKE-IELLTKLKNYDMPIKEKNPLYTDYGEFYPHAKIGELFPLIPQIQNASQIPPKKELKAYGFLKDAKGYAALQSVFLDEKDFFVFPKAFTSEIMA-YFINTMLGQKYGWGGLLGNR-DCSAFTRDSFANFGILLPRNSYAQSRYANNYVDLSS-MKAKEKEDYIIKNATPFGTLIYLKGHIMLYLGERNHQAIVAHSI-WSVQTQKHFKTLSHKIGGVVITSLWLAEEHNGAFSKKKLLIDRVLGMSDLKDFVHKTSSPLNAN |
| 4FDY Chain:A ((46-340)) | -----------------------------------------------------------------------------------------------------------------------GVTVSPEVLAHRPLIEKYGKEYGIEDYVSYILAIMQVESGGTAEDVMQSSESLGLPPNSLSTEESIKQGVKYFSELLTSAEQQGVDIDSVIQSYNYGGGFLNYVRS-HGKKYTYELAEQFSKEKSGGQKADYPNPIAIPVNGGWRYNYGNQFYVQLVSQYLTDTSPTEFDDETVQVIMDEALKYEGFPYVFGGASPTTSFDSGLIQWVYDKAGISLPRVAQDQYDATQEI----SMEEAQAGDLIFFHSTYNAGTYV---THVAIYLEG-NRFYHAGDPIGYGDLSSRYWQDHLIGARRVIHN------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4FDY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 48525 for 2127 contacts (22.8/contact) +
2D Compatibility (PS) -28778 + (NN) -46 + (LL) 11588
1D Compatibility (HY) 10400 + (ID) 1150
Total energy: 40539.0 ( 19.06 by residue)
QMean score : -0.010
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