Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------------------------MKHLAPLIH---IPFKALWLGTALSMFLSLNLNAEENPTKTEPKPAKGVKNKPKSPVTNVMMTNCDNLKDFNAKQ--KEVLKAAYQFGSKENLGYEMAGIAWKESCAGTYKINFSDPSAGIYHAYIPSVLKSYGHNNS---PFLRNVMGELLIKDDAFASEVALKEL-----LYWKTRYHDNLKDMIKSYNK------GSRWEKNEKANADAE--------KYYEEIQDRIRRLKESKIFDSQSSNDQELQKSANSNLDLDPIGNAMPQTLAQTETQKSQIEKSQIEEAQTQKSQEMKEAASEQAIKKPLEKEKDKPMYLAQINSADFAPAKKSPKKPAKASPKRSSKNNISVKSNTKTASKN-KEVCKNCSPGQRNAILANHITLMQEL------------------ |
| 4NOM Chain:A ((26-432)) | EDGGKHWVVIVAGSNGWYNYRHQADACHAYQIIHRNGIPDEQIIVM----MYDDI-ANSEENPTP------GVVINRPNG--TDVYK---GVLKDYTGEDVTPENFLAVLR-GDAEAVKGKGSGKVLKSGPRDHVFIYFTDHGATGILVFPNDDLHVKDLNKTIRYMYEHKMYQKMVFYIEACESGSMMNHLPDDINVYATTAANPKESSYACYYDEERGTYLGDWYSVNWMEDSDVEDLTKETLHKQYHLVKSHTNTSHVMQYGNKSISTMKVMQFQGMKHRASSPISLPPVTHLDLTPSPDVPLTILKRKLLRTNDVKESQNLIGQIQQFLDARHVIEKSVHKIVSLLAGF---------GETAERHLSERTMLTAHDCYQEAVTHFRTHCFNWHSVTYEHALRYLYVLANLCEAPYPIDRIEMAMDKVCL |
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General information:
TITO was launched using:
| RESULT:
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Template: 4NOM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 102053 for 2618 contacts (39.0/contact) +
2D Compatibility (PS) -35263 + (NN) -7982 + (LL) 796
1D Compatibility (HY) -6000 + (ID) 3100
Total energy: 50504.0 ( 19.29 by residue)
QMean score : 0.156
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