Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKLKSFGVFGNPIKHSKSPLIHNACFLTFQKELGFLGHYHPILLPLESRIKNEFLHLGLSGANVTLPFKERAFQICDKIKGIALECASVNTL-VLENDELVGYNTDALGFYLS-LKHQNYQNDQNALILGAGGSAKA-LACGLQKQGLKVSVLNRS-------ARGLDFFQRLGCDCFMEPPKSAFDLIINATSASLHNELPLNKEVLKGYFKESKLAYDLAYG-FLTPFLSLAKELKIPFQ-DGKDMLIYQASLSFEKFSDSQIPYSKAFEVMRSVF |
| 3PGJ Chain:B ((29-277)) | --IDQYAVFG---NHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEA--AKHFFAQGGRGCNVTVPFKEEAYRFADRLTERARLAGAVNTLKKLDDGEILGDNTDGEGLVQDLLAQQVLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAF-EQLKQSYDVIINSTSASLDGELPAIDPVI---FSSRSVCYDMMYGKGYTVFNQWARQHGCAQAIDGLGMLVGQAAESFMLWRGLRPGTKQILRELRKNL |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PGJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -97781 for 1935 contacts (-50.5/contact) +
2D Compatibility (PS) -24363 + (NN) -5642 + (LL) 752
1D Compatibility (HY) -12000 + (ID) 4200
Total energy: -143234.0 ( -74.02 by residue)
QMean score : 0.286
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