Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDTPNKDDSIIRFSVSLQQNLLDELDNRIIKNGYSSRSELVRDMIREKLVEDNWVEDNPNDGSKIAVLVVIYDHHQRELNQRMIDIQHASGTHVLCTTHIHMDEHNCLETIILQGNSLEIQRLQLEIGGLRGVKFAKLTKASSFEYNE
2WVC Chain:B ((9-148))
--------SIIRFSVSLQQNLLDELDNR--KNGYSSRSELVRDMIREKLVEDNWAEDNPNDESKIAVLVVIYDGGQRELNQRMIDIQHASGTHVLCTTHIHMDEHNCLETIILQGNSFEIQRLQLEIGGLRGVKFAKLTKASSFEYNE
General information:
TITO was launched using:
RESULT:
Template:
2WVC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38686 for 864 contacts (-44.8/contact) +
2D Compatibility (PS) -15815 + (NN) -9646 + (LL) 284
1D Compatibility (HY) -18800 + (ID) 6650
Total energy: -89313.0 ( -103.37 by residue)
QMean score : 0.471
(partial model without unconserved sides chains):
PDB file :
Tito_2WVC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2WVC-query.scw
PDB file :
Tito_Scwrl_2WVC.pdb
: