Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKSNKKSNHLRAIYRALVIAIGLAVIIVFNYFNRKNNNARSSRRACSCFFSLTGVNLEKIGSFDTGAKLIVLNHQSLLDIIYLEAYHPSNICWIAKKELGEIPFYGHALTDTGMILIDREDKKGIVSLLKACKEKLD-QNRPLVIFPEGTRGKGGEKFLPFKQGAKIIAEKFQLKIQPMVLINSIKIFNSKPLEAYKARTRLVMLESYTPDFSSPTWYEELQERMQKEYLKHYHELNA |
| 2LND Chain:A ((39-64)) | -------------------------------------------------------------------------------------------------------------------------------DIRDIIKSMKDNGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVLKSTDPEELTQRVREFLKTAGSLEHHHHHH------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2LND.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -4595 for 87 contacts (-52.8/contact) +
2D Compatibility (PS) -2923 + (NN) -2526 + (LL) 12088
1D Compatibility (HY) -2400 + (ID) 250
Total energy: -606.0 ( -6.97 by residue)
QMean score : 0.830
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