Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLSSNDLFMVVLGAILLVLVCLVGYLYLKEKEFYHKMRRLEKTLDESYQENYLYSKRLRELEGRLEGLSLEKSAKEDSSLKTTLSHLYNQLQEIQKSMDKERDYLEEKIITLENKFKDMGHYAASDEVNEKQVLKMYQEGYSVDSISKEFKVSKGEVEFILNMAGLKW
1PDN Chain:C ((17-57))
---------------------------------------------------------------------------------------------------------------------------PLPNNIRLKIVEMAADGIRPCVISRQLRVSHGCVSKILNRYQETG
General information:
TITO was launched using:
RESULT:
Template:
1PDN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11944 for 254 contacts (-47.0/contact) +
2D Compatibility (PS) -4376 + (NN) -1671 + (LL) 10472
1D Compatibility (HY) -2000 + (ID) 550
Total energy: -10069.0 ( -39.64 by residue)
QMean score : 0.786
(partial model without unconserved sides chains):
PDB file :
Tito_1PDN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PDN-query.scw
PDB file :
Tito_Scwrl_1PDN.pdb
: