Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--MEFLSGYFLWVKAFHVIAVISWM--AALFYLPRLFVYHAE---NAHKKEFVGVVQIQEKKLYSFIASPAMGFTLITGILMLLIAPEMFKSGGWLHAKLALVVLLLIYHFYCK-------------------KCMRELEKDP-----------------TGKNARFYRVFNEIPTIL--------MILI----VILVVVKPF------
3L56 Chain:B ((541-745))
GPESVLVNTYQWIIRNWETVKIQWSQDPTMLYNKMEFEPFQSLVPKAARGQYSGFV----RTLFQQMRDVLGTFDTVQIIKLLPFAAAPPKQSRMQFSSLTVNVRGSGMRILVRGNSPVFNYNKATKRLTVLGKDAGALTEDPDEGTAGVESAVLRGFLILGKEDKRYGPALSINELSNLAKGEKANVLIGQGDVVLVMKRKRDSSILT
General information:
TITO was launched using:
RESULT:
Template:
3L56.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -127325 for 892 contacts (-142.7/contact) +
2D Compatibility (PS) -15014 + (NN) 777 + (LL) 548
1D Compatibility (HY) -3200 + (ID) 1500
Total energy: -145714.0 ( -163.36 by residue)
QMean score : 0.283
(partial model without unconserved sides chains):
PDB file :
Tito_3L56.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3L56-query.scw
PDB file :
Tito_Scwrl_3L56.pdb
: