Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLVTRFKKAFISYSLGVLVVSLLLNVCNASAQEVKVKDYFG--EQTIKLPVSKIAYIG-SYVEVPAMLNVWDRVVGVSDYAFKDDIVKATLKGEDLKRVKHMSTDHTAALNVELLKKLSPDLVVTFVGNPKAVEHAKKFGISFLSFQE---TTIAEAMQAMQAQATVLEID--ASKKFAKMQETLDFIAERLKGVKKKKGVELFH-KANKISGHQAISSDILEKGGIDNFGLKY-VKFGRADISVEKIVKENPEIIFIWWVSP-----LTPEDVLNNPKFSTIKAIKNKQVYKLPT--MD--IGGPR-APLISLFIALKAHPEAFKGVDINAIVKDYYKVVFDLNDAEIEPFLWH |
| 3GFV Chain:A ((14-299)) | ------------------------------KEQITVKHQLDKNGTKVPKNPKKVVVFDFGSLDTLDKLGLDDIVAGLPKQVL-PKYLS-KF--K-DDKYADVGS--LKEPDFDKVAELDPDLIIISARQSESYKEFSKIA-PTIYLGVDTAKYMESFKSDAETIGKIFDKEDKVKDELANIDHSIADVKKTAEKLNKNGLVIMANDGKISAFGPKSRYGLIHDVFGVAPADQNIKASTHGQSVSYEYISKTNPDYLFVIDRGTAIGETSSTKQVVENDYVKNVNAVKNGHVIYLDSATWYLSGGGLESMTQMIKEVKDGLEKEN------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GFV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -117740 for 2202 contacts (-53.5/contact) +
2D Compatibility (PS) -28721 + (NN) -12638 + (LL) 5584
1D Compatibility (HY) -9200 + (ID) 1750
Total energy: -164465.0 ( -74.69 by residue)
QMean score : 0.474
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