Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LAETVKINSEFVTLGQLLQ-MIDVVSTGGMAKAYLSENTIYINGEQDNRRGKKLRNGDVILVPGVGKVKIEQGK
3KBG Chain:A ((36-97))
---------QSVTLLSIIRDYLKLSDKEREAARILANGLVKVDGKTVREKKFAVGFMDVIEINGE-SYRV----
General information:
TITO was launched using:
RESULT:
Template:
3KBG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26923 for 374 contacts (-72.0/contact) +
2D Compatibility (PS) -6320 + (NN) -1830 + (LL) 772
1D Compatibility (HY) -2800 + (ID) 300
Total energy: -37401.0 ( -100.00 by residue)
QMean score : 0.196
(partial model without unconserved sides chains):
PDB file :
Tito_3KBG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KBG-query.scw
PDB file :
Tito_Scwrl_3KBG.pdb
: