Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----MTQNNKSNAAHAEGGIPWKHIVGFALSVVLT------LLAVWVALYSTLTTNVKVVIIFIFAFIQA---ALQLLMFMHMTEGRDGKIQIGNILFAAFIAIVVVI---GSYWVMEIGHMNHLL-----------------
4GA2 Chain:A ((2-145))
RRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGED
General information:
TITO was launched using:
RESULT:
Template:
4GA2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104208 for 762 contacts (-136.8/contact) +
2D Compatibility (PS) -11590 + (NN) -7148 + (LL) 0
1D Compatibility (HY) 1200 + (ID) 600
Total energy: -122346.0 ( -160.56 by residue)
QMean score : 0.145
(partial model without unconserved sides chains):
PDB file :
Tito_4GA2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GA2-query.scw
PDB file :
Tito_Scwrl_4GA2.pdb
: