Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LDYIIAAHGRYAQEVKDSCQMIT-GQTTNISAITFTEEMGVTDVLDAYMAVYSPVNETAIIVDI--VGGTPCNAAQMFSTK-----HPEVKVVSGLSLGLIIPLSLGESLEEAMLGAKDNIQFVEQKASHTIVSDDGEEED
2BFD Chain:B ((221-318))
-DVTLVAWGTQVHVIREVASMAKEKLGVSCEVIDLRTIIPWD--VDTICKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFP----------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2BFD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60631 for 622 contacts (-97.5/contact) +
2D Compatibility (PS) -10040 + (NN) -2597 + (LL) 2804
1D Compatibility (HY) -1600 + (ID) 550
Total energy: -72614.0 ( -116.74 by residue)
QMean score : 0.466
(partial model without unconserved sides chains):
PDB file :
Tito_2BFD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2BFD-query.scw
PDB file :
Tito_Scwrl_2BFD.pdb
: