Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKITAPRIPDGDLTVYPNDTYFIEDIGEVSEQIFRKTTLTGEIFEHFHLETIIFDGCVFDSVSLVSANLTDVVFKNCDLSNLDLMGAIIHRVRFENCKLIGMNFSDATLRNCVFVDCYADYVAFRYANLKWVAFEAGAYTNSDFSGAQLVDTYLERLDLNKAQFLNCALNGIDLSSCIFESITAMPQDLKGMSIDFSHAPALMPLFGIRVK
2J8K Chain:A ((35-194))
--------------------------------RDFSIVDLRGAVLENINLSGAILHGAM-----LDEANLQQANLSRADLSGATLNGADLRGANLSKADLSDAILDNAILEGAILDEAVLNQANLKAANLEQAILSHANIREADLSEANLEAADLSGADLAIADLHQANLHQAALERANLTGANLEDANLEGTILEG---------------
General information:
TITO was launched using:
RESULT:
Template:
2J8K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -233564 for 1507 contacts (-155.0/contact) +
2D Compatibility (PS) -15388 + (NN) 8283 + (LL) 2860
1D Compatibility (HY) -800 + (ID) 1750
Total energy: -240359.0 ( -159.50 by residue)
QMean score : 0.254
(partial model without unconserved sides chains):
PDB file :
Tito_2J8K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2J8K-query.scw
PDB file :
Tito_Scwrl_2J8K.pdb
: