Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MFNKKKTIASLIVLSSLASQIALTPISALADTHDTNNIALLQNTNENVPYKYTSTLTFPTLTNQTQEDYKLEIKLALPSGMNYTDLQVSVGGEDITNQVGTTSFDNSTNTVTFKFDKVTSWDSLSKAKVKFDWKTSYSGEGGEAKIDSLVATATATSEDKAGNKSTSTGSLKPKDISAPVVKAEETEITYSPGSDVTEEQFLTDIHASVTDNYDSTISLTSNFTSAVNLAVSGDYSVNVQATDKAGNVSNTLNVTVHVSTPAPVAGANITVNHLDSNGNKIAESDTLTGVVNSNYQSE--SKKITGYTLETTPTNATGTFTDTPQTVDYIYKKDTVTPTPITVNPVEPVKPVNPVVNKPVTVKPANDNTNPSTSNSVEKTTYSSLPTTGDTDQSKSSTIFGALLLLISAPLLLFKKK |
| 2YN5 Chain:A ((1-283)) | -----------------------TPPNA--------------------PVVTYSDIVNDLIIMQGTAEAKSQLIITDSEG----------------NTYTLTVPDNGKWSMAIPY--------PSEGKFTITSVDAIGNRSDDVPLDIMKEVPVISLSPDSDSGTVGDNITRDKQPTFIIGNLE---------SDVVVVQVDIN---GTVYNAEKNADGVWFFTPGTPLA-DGSYTISVIASDAAGNQKNSLPITVTIDSTLTVP--EIALAAGEDNGAS--DSDNVTNHTQPKFTLQHIDADVTGVTVNVTHNGVTDIYQATQGADGWTF-------TP-------PAAWNDGNYTLSVTVVDRAGNSQQSASLAVTVDS------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YN5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 98220 for 2058 contacts (47.7/contact) +
2D Compatibility (PS) -30211 + (NN) -5842 + (LL) 8584
1D Compatibility (HY) -5200 + (ID) 3050
Total energy: 62501.0 ( 30.37 by residue)
QMean score : 0.130
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