Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKGLLLLMVVVLSVFGLSACGGGSSSGDKTEITYYQFSAPADGKALDEMVKEFEKQNPDIKVNVQTIAFNDYFTKLQTQIAGGDAPDAFELNYETFMQYAEKGVLADLTSYIEKDKDFDPSTLNKQAYDAFKYDGKQYGMVESFSNVVTIYNKDLFDKAGVEYPTADWTWKDEEAAAKKLTDA-KNKVWGTSQPVTMN-EFYKVAAQNGGSIFNEDLTETTINSPENVEALTHLTNEVTDSKVAPSPADLSGQLPEDLFMNGQIAMLHTGIWLFDMFQDA-----PFKWDV-QVEAGNTQKATHFFANGIGVSKDSDKKEAAFKFASFMSANEEAAKIRIDNNWELPATENKEILQPYLDATPPDNREAVFESLQYMVLPPVVKDWNKISDYTNSEFEKVLNGDSTPEKALKNSEDNINKTMGFK |
3UOR Chain:A ((27-413)) | -----------------------------KTTVRFWAMGK--EAEVVAELVADFEKQNPTIHVDVQNIPMTAAHEKLLTAFAADGLPDVCQLGNTWLPEFALLDTLEPMQPYVARSKIVDPADYFPGVWDTNLVDGTLYGVPWYVDTRLLFYRKDLLREAGYSQMP--KTWAEMEQVMAAIKRKVGPDRYAILMPLNEFEQQLSFALQQDDRLLRDHDNYGNFRGAGFRKALGFYDNMYQQGWAPKVSE-TQVSNVWYEFFNGYYAFYLSGPWNVREFKLRQPPGMEGNWGTAPLPGPNGLGAGIAGGSSLVIFKSSQHKDASWKLIEYLSQPQV-QARFHAIIGDLPPRRSTWKLPSLANDA---LAHAFGDQLERVKATPKVLEWERIVQEMRLVTERVVRGGQSHDAAVQELDQRVDEILAK- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3UOR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -64663 for 3254 contacts (-19.9/contact) +
2D Compatibility (PS) -41773 + (NN) -26464 + (LL) 1300
1D Compatibility (HY) -15600 + (ID) 3850
Total energy: -151050.0 ( -46.42 by residue)
QMean score : 0.437
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