Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MILVIDVGNTNCTVGVYEKQKLLKHWRMTTDRHRTSDELGMTVLNFFSYANLTP------SDIQGIIISSVVPPIMHAMETMCVRYFNIRPLIVGPGIKTG-LNLKVDNPREIGSDRIVNAVAASEEYGTPVIVVDFGTATTFCYIDESGVYQGGAIAPGIMISTEALYNRAAKLPRVDIAESSQIIGKSTVSSMQAGIFYGFVGQCEGIIAEMKKQSNASPVVVATGGLARMITEKSSAVDILDPFLTLKGLELLYRRNKPTTEK
3BEX Chain:C ((4-242))
MYLLVDVGNTHSVFSITEDGKTFRRWRLSTGVFQTEDEL---------FSHLHPLLGDAMREIKGIGVASVVPTQNTVIERFSQKYFHISPIWVKA--KNGCVKWNVKNPSEVGADRVANVVAFVKEYGKNGIIIDMGTATTVDLV-VNGSYEGGAILPGFFMMVHSLFRGTAKLPLVEVKPADFVVGKDTEENIRLGVVNGSVYALEGIIGRIKEVYGDLPVVL-TGGQSKIVKDMIKH-EIFDEDLTIKGV-------------
General information:
TITO was launched using:
RESULT:
Template:
3BEX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -174879 for 1847 contacts (-94.7/contact) +
2D Compatibility (PS) -24948 + (NN) -9078 + (LL) 1768
1D Compatibility (HY) -21600 + (ID) 4500
Total energy: -233237.0 ( -126.28 by residue)
QMean score : 0.525
(partial model without unconserved sides chains):
PDB file :
Tito_3BEX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3BEX-query.scw
PDB file :
Tito_Scwrl_3BEX.pdb
: