Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------MSKVLEAKQSAVEEIKTKLSASASTVIVDYRGLNVGEITDLRKQLRDAGIEFKVYKNSLTRRAVEANGYEGLEGALTGPNAIAFSNEDVVAPAKILND--FAKDHEALEIKAGVIEGKVASLEEIKALATLPSREGLLSMLCNVLQAPVRGLAIATKAVADQKEGQEA
1DE3 Chain:A ((1-150))
AVTWTCLNDQKNPKTNKYETKRLLYNQNKAESNSHHAPLSDGK----------TGSSYPHWFT---------NGYDGDGKLPKGRTPIKFGKSDCDRPPKHSKDGNGKTDHYLLEFPT-FPDGHDYKFDSKKP----KENPGPARVIYTYPNKVFCGIIAHTKENQGELKLCSH
General information:
TITO was launched using:
RESULT:
Template:
1DE3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -8845 for 1010 contacts (-8.8/contact) +
2D Compatibility (PS) -14269 + (NN) 3131 + (LL) 2200
1D Compatibility (HY) 1600 + (ID) 1300
Total energy: -17483.0 ( -17.31 by residue)
QMean score : 0.100
(partial model without unconserved sides chains):
PDB file :
Tito_1DE3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DE3-query.scw
PDB file :
Tito_Scwrl_1DE3.pdb
: