Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MISIVLVSHSQKITEGLQEMIVEMV-GDTVHIISSGGTGDGRLGTNAIMIADNIATCTNSEHIYIFCDI--GSAILSAETALELLDTDLLEKTTIIDAPLVEGAFTAAVQSLVNPSKEAILQELTNVH
1PDO Chain:A ((2-116))
TIAIVIGTHGW-AAEQLLKTAEMLLGEQE-NVGWIDFVPGENAETLIEKYNAQLAKLDTTKGVLFLVDTWGGSPFNAASRIVVD-KEH-YEVIAGVNIPMLVETLMA---RDDDPSFDELVA------
General information:
TITO was launched using:
RESULT:
Template:
1PDO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70600 for 850 contacts (-83.1/contact) +
2D Compatibility (PS) -12367 + (NN) -4909 + (LL) 1552
1D Compatibility (HY) -3600 + (ID) 850
Total energy: -90774.0 ( -106.79 by residue)
QMean score : 0.442
(partial model without unconserved sides chains):
PDB file :
Tito_1PDO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PDO-query.scw
PDB file :
Tito_Scwrl_1PDO.pdb
: