Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVKTWEEFLKQEAKQPYFIELMEAVKDARAKGNVYPSEEDMFSCFRLCPYNQVKVVILGQDPYHGPGQAHGLSFSVQKDVRIPPSLRNIYKELKTDL-DIEPADHGYLAKWAEQGVLLMNTSWSVEEGKAGSHKKLGWATFTDHVLEELNNYDKPLVFILWGNHAIKAASGITNPQHLIIKGVHPSPLAASRGFFGSKPFSKTNAFLEEHERKPIDWDLNEQ
1EMH Chain:A ((6-220))
--ESWKKHLSGEFGKPYFIKLMGFVAEERKHYTVYPPPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQRPVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLVFLLWGSYAQKKGSAIDRKRHHVLQTAHPSPLSVYRGFFGCRHFSKTNELLQKSGKKPIDW-----
General information:
TITO was launched using:
RESULT:
Template:
1EMH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108517 for 1759 contacts (-61.7/contact) +
2D Compatibility (PS) -23063 + (NN) -12942 + (LL) 644
1D Compatibility (HY) -21200 + (ID) 5450
Total energy: -170528.0 ( -96.95 by residue)
QMean score : 0.716
(partial model without unconserved sides chains):
PDB file :
Tito_1EMH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1EMH-query.scw
PDB file :
Tito_Scwrl_1EMH.pdb
: