Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQNDMYNNIRLSVIQ-------------LIDSKKENLKENNIKLTIIKNEKDGYVVELD-NDKCMAEIVVEEPTYTPYRY-ISFEVVSLMDGKVKIIYSWYDDETSQ------WSDIEKELNKGIQFLNNFKTMEQ----------
4QXZ Chain:A ((19-164))
SHMKTFKAVRFQIVNEHGRIIEYELEDGVIINKEESGTGWLLEIVISNEHYETFKEYQDNEQLLDIRVVITRPANDPALFESTVKSIKNFKTTMSIVFECHIYTLRQQYAESLLEQLIDDGLSGEELKKSFNRMMQSKPKLKDEKL
General information:
TITO was launched using:
RESULT:
Template:
4QXZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26978 for 682 contacts (-39.6/contact) +
2D Compatibility (PS) -12636 + (NN) -3293 + (LL) 0
1D Compatibility (HY) -4800 + (ID) 750
Total energy: -48457.0 ( -71.05 by residue)
QMean score : 0.370
(partial model without unconserved sides chains):
PDB file :
Tito_4QXZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QXZ-query.scw
PDB file :
Tito_Scwrl_4QXZ.pdb
: