Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMQKEMLNFDYYNPTHIIFGKNRFNELNEVIPQ-DK-KVLILYGGGSVERFGTLDKVKAA--LKSREVGEFGGIEANPTYETLIKAIQLVKEENYDFLLAVGGGSVIDGTKFVAAGALFDGEPMDIFGSGIGEKRPITKALPFGTVLTLPATGSEMNSGGVITFVEKKAKLGFGSAYTYPVFSLLDPELTYTLPKRQLANGIMDAYVHVMEQYMTYPVGALLQDRYAESLLQTLIEIGPDVIKEDNHDYNTRATFMWSATNALNGTLSRGV-PQDWASHSLGHEITALYGIDHARTLAIVLPSLLNVRRSEKHDKLVQYAERVWGITSGSDEEKIDAAILKTREFFESLGAGTRFSDYGLGEEVVDLLVDQLDRHG-L------TNISERGDQTLEVSRQIYTNAL
1VLJ Chain:A ((12-406))---HMENFVFHNPTKIVFGRGTIPKIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKEKVEAVLGVGGGSVVDSAKAVAAGALYEGDIWDAFIGK---Y-QIEKALPIFDVLTISATGTEMNGNAVITNEKTKEKYGVSSKALYPKVSIIDPSVQFTLPKEQTVYGAVDAISHILEYYFDGS-SPEISNEIAEGTIRTIMKMTERLIEKPD-DYEARANLAWSATIALNGTMAVGRRGGEWACHRIEHSLSALYDIAHGAGLAIVFPAWMKYVYRKNPAQFERFAKKIFGFEGE-GEELILKGIEAFKNWLKKVGAPVSLKDAGIPEEDIDKIVDNVMLLVEKNLKPKGASLGRIMVLEREDVREILKLAA


General information:
TITO was launched using:
RESULT:

Template: 1VLJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -189559 for 3564 contacts (-53.2/contact) +
2D Compatibility (PS) -40871 + (NN) -15659 + (LL) 836
1D Compatibility (HY) -29200 + (ID) 6850
Total energy: -281303.0 ( -78.93 by residue)
QMean score : 0.529

(partial model without unconserved sides chains):
PDB file : Tito_1VLJ.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1VLJ-query.scw
PDB file : Tito_Scwrl_1VLJ.pdb: