Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MHKHHLSKKLFFAGLVLFIIGAIGVAFTMNTGKMIEKGEPLTKQWDLSTENIKKIAFSSERDASIEWKESTTGKNYIELKGNYSANDKKAIQQLEPVSEDGTSFDITVPEEDDWYNGFGKIYAYGKQKVTIYLTKDTKLADLEVKSHSGDIDVADFKVKKFVSSTNSGELKVTNLEANTAQMATSSGDLTLSNIKANSSIETDSGKTELTNLTGDLEVNGGSGDVNVAGVKAKKLKIAIDSGDIELTSGTVTDL-AVLTTSSGDIDANTKGKIQAESDSGSIELAGATNNVTAKTSSGDIDVAFTKQVKNIEINSDSGEVELELPGDFKAIYEASSNSGSVKAP-----TSDSNTDNRVTVKTSSGDIK-IEK---- |
| 3S40 Chain:A ((3-300)) | --KTKFEK-------VLLIVNP-----KAGQGDLHTNLTKIVPPLAAAFPDLHILHTKEQGDATKYCQEFASKVDLIIVFGG-DGTVFECTNGLAPLEIRPTLAIIPGGTCNDFSRTLG------------VPQNIAEAAKLITKEHVKPVDVAKANGQHFLNFWGIGKIGYY-----------------------------------------------------LSTIETFPVKITYDG---QVYEDEAVLVMVGNGEYLGGIPSFIPN---------------------VKCDDGTLDIFVVKSTGIQAFKDYIGKKLFEDSNE-NDIFHVKAKSIHIETEEEKEVDTDSSLHTPCQIELLQGHFTMIYNPAVV |
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General information:
TITO was launched using:
| RESULT:
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Template: 3S40.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 107428 for 2152 contacts (49.9/contact) +
2D Compatibility (PS) -27790 + (NN) -5816 + (LL) 5312
1D Compatibility (HY) -3600 + (ID) 1600
Total energy: 73934.0 ( 34.36 by residue)
QMean score : 0.133
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