Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKEKVLWGYDEKTGPEMWGHICSDFEIAHTGKAQSPVDIEQADVVKLKPSTMKFYYKETDYTIRRIEQSVHVFPHDKEQGLRFNGEYYPLVSFHAHIPAEHLLDGYIYPIEWHFVHEKPDGTTLVMSAWMDIDNTNNIEFKNLPTYFPEVFADFETEREITLDVNEFMPEERVFYTYQGSRTTPPTVEGVTWIVLKNAKTLGQEDFTEFEKAIGN-TSRPVQDLNGREITFYN
1KOP Chain:B ((4-221))
-------WGYTGHDSPESWGNLSEEFRLCSTGKNQSPVNI--TETVSGKLPAIKVNYKPSMVDVENNGHTIQVNYPEGGNTLTVNGRTYTLKQFHFHVPSENQIKGRTFPMEAHFVHLDENKQPLVLAVLYEAGKTNG-RLSSIWNVMPMTAGKVKLNQP--FDASTLLPKRLKYYRFAGSLTTPPCTEGVSWLVLKTYDHIDQAQAEKFTRAVGSENNRPVQPLNARVV----
General information:
TITO was launched using:
RESULT:
Template:
1KOP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94056 for 1691 contacts (-55.6/contact) +
2D Compatibility (PS) -23370 + (NN) -6384 + (LL) 1740
1D Compatibility (HY) -13600 + (ID) 3550
Total energy: -139220.0 ( -82.33 by residue)
QMean score : 0.380
(partial model without unconserved sides chains):
PDB file :
Tito_1KOP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KOP-query.scw
PDB file :
Tito_Scwrl_1KOP.pdb
: