Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | VSKNVKKIVITLFA--LIMTVGLASGFIAPIKASADTNNFTVKVE----YVDADGAEIAPSDILTDYHYVSTPKDIPGYKLREIPHNATGNITDTGIIVRYIYDKTIDVRYVDETGKDLLPVVEIINSEAAVLETISDYTFVKKDISIDGLHIIFRYKKNISTIPDFGKPNQVTVNYLDENKTPIAPSLYLSGLFNEAYNVPMKKIKG-YTLLKYDSEILG---VFTESPQTINIIYQKKAPEQAPSMEPLPDPTVPESPQVEKSKIKKSKIETTEKRTTSKVKIAPKALK---------LTKVEQKKQETKDSLPKTGDSSVNLLITCLGIIAISCGVYLLVQQSQKRRRKE |
| 4IIK Chain:A ((1-314)) | -----MRSIITQICNGVLHGQSYQSG-----SNDLDKGNSEIFASSLFVHLNEQGKEIKDSD---DKIVIGYTKD--------------GMAFQIVVDGFYGCERQAVFSFIDNY------VLPLIDNFSLDLTRYPD----SKKVTESLIHTIYSLRSKHAPLAEF--TMSLCVTYQKDE------QLFCAGFGIGDTGIAIKRNEGTIEQLVCHTEVDGFKDAFDNYSSANIDLVIERNSVFNTKVMP-GDELVGYTYVPPMLEMTEKEFEV-EKRIVRHLNLDPGNFDDKDPLFSQLLQVVKSKQKQLVEQAKETGQIQRFGDDFTVGRLVIPD--QLLINQLRIHALS- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4IIK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 15795 for 2265 contacts (7.0/contact) +
2D Compatibility (PS) -29494 + (NN) 2807 + (LL) 2892
1D Compatibility (HY) -10000 + (ID) 2650
Total energy: -20650.0 ( -9.12 by residue)
QMean score : 0.140
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