Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDNKLEFTTIDEYITQAP-PETKEVLQKIRETIKAAAPEATEKISYQMPTFYLEG-NLVHFAVAKNHYGFYPASSGIAAFES-KL-GNYKHSKGAVQFPIKEEVPYELIKEMTLFRLAENKQKAAEKLAKKKKK
2KL4 Chain:A ((2-117))
----SHMEVFAEYLKGIDHPDHRDRTEEILSWVAATFPNLEPQMKWNTPMFSNQGTFIIGFSTSKHHLSVSPEEIGISQFADAIAQAGYSATKGLFRIPWNDPVHYELLKQMIEFNIQDK--------------
General information:
TITO was launched using:
RESULT:
Template:
2KL4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39661 for 771 contacts (-51.4/contact) +
2D Compatibility (PS) -12161 + (NN) -6013 + (LL) 1460
1D Compatibility (HY) -6800 + (ID) 1350
Total energy: -64525.0 ( -83.69 by residue)
QMean score : 0.508
(partial model without unconserved sides chains):
PDB file :
Tito_2KL4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KL4-query.scw
PDB file :
Tito_Scwrl_2KL4.pdb
: