Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKVKKAVIPAAGLGTRFLPATKAMPKEILPIVDKPTIQFIVEEAVASGIEDILIVTGKGKRAIEDHFDSVPELENNLREKNKLDLLHLVEETTN-INLHFIRQSKPKGLGDAILQAKGFIGNEPFV--VMLGDDIVQSKTPCAKQLIDQYEKTHSSVIGVQNVPREETYRYGIIDPDKEVSDR-LYNVTGFVEKPNVEDAPSNLAILGRYLLTPEIFKYLETQEAGSGGEIQLTDAINRL-NEIQPVFAYDFEGERFDVGDKFGFIETTLKFALKHP----EIKDDVRDLIIRLGDELK |
| 2PA4 Chain:C ((12-299)) | --VKTVVVPAAGLGTRFLPATKTVPKELLPVVDTPGIELIAAEAAELGATRLAIITAPNKAGVLAHFERSSELEETLMERGKTDQVEIIRRAADLIKAVPVTQDKPLGLGHAVGLAESVLDDDEDVVAVMLPDDLVLP-TGVMERMAQVRAEFGGSVLCAVEVSEADVSKYGIFEIEADTKDSDVKKVKGMVEKPAIEDAPSRLAATGRYLLDRKIFDALRRITPGAGGELQLTDAIDLLIDEGHPVHIVIHQGKRHDLGNPGGYIPACVDFGLSHPVYGAQLKDAIKQIL-------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2PA4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -136954 for 2252 contacts (-60.8/contact) +
2D Compatibility (PS) -29939 + (NN) -13294 + (LL) 912
1D Compatibility (HY) -18800 + (ID) 5650
Total energy: -203725.0 ( -90.46 by residue)
QMean score : 0.511
|
|
|