Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKMDTLGFLELNSISKGIEAVDTMLKAANSELIYAKASCPGKYYILIAGTVDSVAQSIEAGTKIGAANIVGNLVIPRVSDQVIKAINKTEVPDEMNAVGVMEYYSCSGSIIAADAAVKAADVQLMDIRLATGIAGKSFVVLTGDTAACETAVEAGLAAAKEEALLINKVVIPRPRKEVFESLIY
3VCD Chain:H ((5-182))-----IGILELTSIAAGMELGDAMLKSANVDLLVSKTISPGKFLLMLGGDIGAIQQAIETGTSQAGELLVDSLVLANIHPSVLPAISGLNSVDKRQAVGIVETWSVAACISAADRAVKGSNVTLVRVHMAFGIGGKCYMVVAGDVSDVALAVTVASSSAGAYGLLVYASLIPRPHEAMWRQMV-


General information:
TITO was launched using:
RESULT:

Template: 3VCD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -138233 for 1497 contacts (-92.3/contact) +
2D Compatibility (PS) -18572 + (NN) -2396 + (LL) 548
1D Compatibility (HY) -18800 + (ID) 3150
Total energy: -180603.0 ( -120.64 by residue)
QMean score : 0.578

(partial model without unconserved sides chains):
PDB file : Tito_3VCD.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3VCD-query.scw
PDB file : Tito_Scwrl_3VCD.pdb: