Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKLGNDWDELLKNEFNQPYYLTLRQFLKKEYQTKKVFPDMYDIFNALKHTAYKDVKVVILGQDPYHGPGQAHGLSFSVQQGVQIPPSLQNIYLELHNDLNCEI-PNNGYLIPWADQGVLLLNTVLTVRAGQANSHRGQGWEILTNHIIEIINQKEEPVVFLLWGSNAKEKLQLLTNPKHTAFTSVHPSPLSASRGFMGCKHFSKTNQFLEQNGVKPIDWQIPSI
1EMJ Chain:A ((4-221))
---FGESWKKHLSGEFGKPYFIKLMGFVAEERKHYTVYPPPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQRPVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLVFLLWGSYAQKKGSAIDRKRHHVLQTAHPSPLSVYRGFFGCRHFSKTNELLQKSGKKPIDWK----
General information:
TITO was launched using:
RESULT:
Template:
1EMJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94034 for 1789 contacts (-52.6/contact) +
2D Compatibility (PS) -23276 + (NN) -8140 + (LL) 716
1D Compatibility (HY) -19200 + (ID) 5600
Total energy: -149534.0 ( -83.59 by residue)
QMean score : 0.584
(partial model without unconserved sides chains):
PDB file :
Tito_1EMJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1EMJ-query.scw
PDB file :
Tito_Scwrl_1EMJ.pdb
: