Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTYELPKLPYTYDALEPNFDKETMEIHYTKHHNTYVTKLNEAVAGHPELASKSAEELVTNLDSVPEDIRGAVRNHGGGHANHTLFWSILSP--NGGGAPTGNLKAAIESEFGTFDEFKEKFNAAAAARFGSGWAWLVVNDGKLEIVSTANQDSPLSD------GKTPVLGLDVWEHAYYLKFQNRRPEYIETFWNVINWDEANKRFDAAK
2CDY Chain:B ((21-231))
LAYTLPQLPYAYDALEPHIDARTMEIHHTKHHQTYVDNANKALE---EFADLPVEQLIQQLDRVPADKKGALRNNAGGHANHSMFWQIMGQGQ---NQPSGELLDAINSAFGSFDAFKQKFEDAAKTRFGSGWAWLVVKDGKLDVVSTANQDNPLMGEAIAGVSGTPILGVDVWEHAYYLNYQNRRPDYLAAFWNVVNWDEVSKRYAAAK
General information:
TITO was launched using:
RESULT:
Template:
2CDY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -75522 for 1573 contacts (-48.0/contact) +
2D Compatibility (PS) -20364 + (NN) -6246 + (LL) -692
1D Compatibility (HY) -21600 + (ID) 6050
Total energy: -130474.0 ( -82.95 by residue)
QMean score : 0.707
(partial model without unconserved sides chains):
PDB file :
Tito_2CDY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CDY-query.scw
PDB file :
Tito_Scwrl_2CDY.pdb
: