Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPNIKSAIKRVKTAETRNSRNASQRSAMRTAIKKFDEAAANNA-DNAKDLYVEASKKLDSAVSKGLIHKNNAARNKSRLAAKLAK
2YKR Chain:T ((2-84))
--NIKSAKKRAIQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAAQKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINK
General information:
TITO was launched using:
RESULT:
Template:
2YKR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 9403 for 524 contacts (17.9/contact) +
2D Compatibility (PS) -8600 + (NN) 52 + (LL) 68
1D Compatibility (HY) -2000 + (ID) 1850
Total energy: -2927.0 ( -5.59 by residue)
QMean score : 0.585
(partial model without unconserved sides chains):
PDB file :
Tito_2YKR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YKR-query.scw
PDB file :
Tito_Scwrl_2YKR.pdb
: