Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKVALVTGSSRGLGREIAIALAKEGYDI-AVNFSRNRKKAEEVQQEIEQLGRKCVIFKANVGDVEKVRELFKAVDEEFGRLDIFINNAASGVLR--PLMELEESHWDWTMNINAKALLFAGQEAAK-LMQRHQSGKIISLSSI----GSIRYLENYTTVGVSKAAVESLTRYLAVELAPFGIAVNAVSGGLIETDALNHFPNREELLKDAVSKTPAGRMIEPNDLVNAVLFLASEKADMIRGQTILVDGGRTLLV
4Z9Y Chain:B ((11-249))
--KVALITGCDTGLGQGMAIGLAQAGCDIVGVNIVEPKDTIEKVTA----LGRRFLSLTADMSNVSGHAELVEKAVAEFGHVDILVNNA--GIIRREDAIEFSEKNWDDVMNLNIKSVFFMSQTVARQFIKQGKGGKIINIASMLSFQGGIR-VPSYTA---SKSAVMGVTRLMANEWAKHGINVNAIAPGYMATNNTQQLRADEERSKEILDRIPAGRWGLPQDLMGPSVFLASSASDYINGYTIAVDGG-----
General information:
TITO was launched using:
RESULT:
Template:
4Z9Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -109486 for 1910 contacts (-57.3/contact) +
2D Compatibility (PS) -25473 + (NN) -13455 + (LL) 1776
1D Compatibility (HY) -21200 + (ID) 4850
Total energy: -172688.0 ( -90.41 by residue)
QMean score : 0.607
(partial model without unconserved sides chains):
PDB file :
Tito_4Z9Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4Z9Y-query.scw
PDB file :
Tito_Scwrl_4Z9Y.pdb
: